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NOTES:

  • Installation
  • Cite

PACKAGE REFERENCE:

  • HELPpy package
    • Subpackages
      • HELPpy.models package
      • HELPpy.preprocess package
      • HELPpy.utility package
      • HELPpy.visualization package
    • Module contents

EXAMPLES:

  • Example 1: Identification of context-specific EGs
  • Example 2: Identification of uncommon context-specific EGs
  • Example 3: Prediction of EGs for a tissue
  • Example 4: Extraction of network embedding from tissue PPI
  • Example 5: Reproduce the experiments reported in the HELP paper
HELPpy
  • HELPpy package
  • View page source

HELPpy package

Subpackages

  • HELPpy.models package
    • Submodules
    • HELPpy.models.labelling module
      • labelling()
      • labelling_core()
      • modemax_nan()
      • multi_threshold_with_nan_by_column()
      • rows_with_all_nan()
    • HELPpy.models.prediction module
      • VotingSplitClassifier
        • VotingSplitClassifier.fit()
        • VotingSplitClassifier.predict()
        • VotingSplitClassifier.predict_proba()
        • VotingSplitClassifier.set_score_request()
      • k_fold_cv()
      • predict_cv()
      • predict_cv_sv()
      • set_seed()
    • Module contents
  • HELPpy.preprocess package
    • Submodules
    • HELPpy.preprocess.embedding module
      • PPI_embed()
    • HELPpy.preprocess.imputer module
      • imputer_knn()
      • imputer_knn_group()
      • imputer_mean()
    • HELPpy.preprocess.loaders module
      • feature_assemble()
      • feature_assemble_df()
      • scale_to_essentials()
    • Module contents
  • HELPpy.utility package
    • Submodules
    • HELPpy.utility.selection module
      • EG_tissues_intersect()
      • EG_tissues_intersect_dolabelling()
      • delrows_with_nan_percentage()
      • filter_cellmap()
      • filter_crispr_by_model()
      • select_cell_lines()
      • set_seed()
    • Module contents
  • HELPpy.visualization package
    • Submodules
    • HELPpy.visualization.plot module
      • svenn_intesect()
    • HELPpy.visualization.ui module
      • Help_Dashboard
        • Help_Dashboard.labelling()
        • Help_Dashboard.process_features()
        • Help_Dashboard.select_cell_lines()
      • cstr()
      • print_color()
    • Module contents

Module contents

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